Special Collection

Bone marrow and neoplastic blood samples must contain a minimum of 20% blasts.
Solid tumor samples must contain a minimum of 40% tumor.
This test is not intended for residual disease detection.
An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Outpatient Submit with Specimen

Collect


Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

Outpatient Specimen Preparation

Tissue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

Unacceptable Conditions

Delayed or improper handling, Insufficient tumor content in tumor sample, Inadequate tissue, Tissue degradation, Wrong type of specimen, Insufficient blast percentage in bone marrow or neoplastic blood sample

Stability

Tissue (Snap-frozen): Frozen 36 month(s)

OCT-embedded tissue: Frozen 36 month(s)

Paraffin embedded tissue: Room temperature 12 month(s)

Tissue (Fresh): Refrigerated 3 day(s)

Tissue scrolls (FFPE): Room temperature 12 month(s)

Bone marrow: Room temperature 3 day(s)
Bone marrow: Refrigerated 7 day(s)

Neoplastic whole blood: Room temperature 3 day(s)
Neoplastic whole blood: Refrigerated 7 day(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children's Epic system, submission of a completed Oncology Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children's Epic system, no requisition form is required; please place the lab order electronically in Epic. Please send all samples via overnight delivery. Saturday deliveries are accepted; please check Saturday Delivery on shipment label.

If submitting tissue scroll specimen, please use this Tissue Scroll Calculator tool to determine the thickness and number of tissue scrolls to send to the laboratory.

For hematologic malignancies, submission of a sample containing at least 20% blasts is required. For solid tumor malignancies, submission of a sample containing at least 40% tumor is required. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Oncology chromosomal microarray analysis is performed on the Affymetrix OncoScan(TM) CNV platform to detect clinically significant chromosomal aberrations and loss of heterozygosity (LOH) in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

2 weeks

Lab Area

Institute for Genomic Medicine

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Methodology

Chromosomal microarray analysis, DNA extraction

CPT Codes

81277

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af

Special Collection

Bone marrow and neoplastic blood samples must contain a minimum of 20% blasts.
Solid tumor samples must contain a minimum of 40% tumor.
This test is not intended for residual disease detection.
An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Collect


Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

Minimum Volume

Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

 

Inpatient Specimen Preparation

issue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

Unacceptable Conditions

Delayed or improper handling, Insufficient tumor content in tumor sample, Inadequate tissue, Tissue degradation, Wrong type of specimen, Insufficient blast percentage in bone marrow or neoplastic blood sample

Stability

Tissue (Snap-frozen): Frozen 36 month(s)

OCT-embedded tissue: Frozen 36 month(s)

Paraffin embedded tissue: Room temperature 12 month(s)

Tissue (Fresh): Refrigerated 3 day(s)

Tissue scrolls (FFPE): Room temperature 12 month(s)

Bone marrow: Room temperature 3 day(s)
Bone marrow: Refrigerated 7 day(s)

Neoplastic whole blood: Room temperature 3 day(s)
Neoplastic whole blood: Refrigerated 7 day(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children's Epic system, submission of a completed Oncology Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children's Epic system, no requisition form is required; please place the lab order electronically in Epic. Please send all samples via overnight delivery. Saturday deliveries are accepted; please check Saturday Delivery on shipment label.

If submitting tissue scroll specimen, please use this Tissue Scroll Calculator tool to determine the thickness and number of tissue scrolls to send to the laboratory.

For hematologic malignancies, submission of a sample containing at least 20% blasts is required. For solid tumor malignancies, submission of a sample containing at least 40% tumor is required. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Oncology chromosomal microarray analysis is performed on the Affymetrix OncoScan(TM) CNV platform to detect clinically significant chromosomal aberrations and loss of heterozygosity (LOH) in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

2 weeks

CPT Codes

81277

Lab Area

Institute for Genomic Medicine

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af

Estimated Patient Price

$1,000 - $2,500

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af

CPT Codes

81277

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Methodology

Chromosomal microarray analysis, DNA extraction

Special Collection

Bone marrow and neoplastic blood samples must contain a minimum of 20% blasts.
Solid tumor samples must contain a minimum of 40% tumor.
This test is not intended for residual disease detection.
An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Outpatient Submit with Specimen

Collect


Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

Minimum Volume

Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

 

Inpatient Specimen Preparation

issue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

Outpatient Specimen Preparation

Tissue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

InLab Processing

Send to Institute for Genomic Medicine (IGM) Lab with all submitted paperwork. For Non-EPIC lab orders, lab staff to order GENSP in Sunquest.

Stability

Tissue (Snap-frozen): Frozen 36 month(s)

OCT-embedded tissue: Frozen 36 month(s)

Paraffin embedded tissue: Room temperature 12 month(s)

Tissue (Fresh): Refrigerated 3 day(s)

Tissue scrolls (FFPE): Room temperature 12 month(s)

Bone marrow: Room temperature 3 day(s)
Bone marrow: Refrigerated 7 day(s)

Neoplastic whole blood: Room temperature 3 day(s)
Neoplastic whole blood: Refrigerated 7 day(s)

Unacceptable Conditions

Delayed or improper handling, Insufficient tumor content in tumor sample, Inadequate tissue, Tissue degradation, Wrong type of specimen, Insufficient blast percentage in bone marrow or neoplastic blood sample

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

2 weeks

Remarks

If you are an external healthcare provider with no access to Nationwide Children's Epic system, submission of a completed Oncology Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children's Epic system, no requisition form is required; please place the lab order electronically in Epic. Please send all samples via overnight delivery. Saturday deliveries are accepted; please check Saturday Delivery on shipment label.

If submitting tissue scroll specimen, please use this Tissue Scroll Calculator tool to determine the thickness and number of tissue scrolls to send to the laboratory.

For hematologic malignancies, submission of a sample containing at least 20% blasts is required. For solid tumor malignancies, submission of a sample containing at least 40% tumor is required. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Oncology chromosomal microarray analysis is performed on the Affymetrix OncoScan(TM) CNV platform to detect clinically significant chromosomal aberrations and loss of heterozygosity (LOH) in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af

Methodology

Chromosomal microarray analysis, DNA extraction

CPT Codes

81277

Estimated Patient Price

$1,000 - $2,500

DC Code

5321

Downtime Availability

4-Not available
Outpatient Requirements

Special Collection

Bone marrow and neoplastic blood samples must contain a minimum of 20% blasts.
Solid tumor samples must contain a minimum of 40% tumor.
This test is not intended for residual disease detection.
An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Outpatient Submit with Specimen

Collect


Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

Outpatient Specimen Preparation

Tissue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

Unacceptable Conditions

Delayed or improper handling, Insufficient tumor content in tumor sample, Inadequate tissue, Tissue degradation, Wrong type of specimen, Insufficient blast percentage in bone marrow or neoplastic blood sample

Stability

Tissue (Snap-frozen): Frozen 36 month(s)

OCT-embedded tissue: Frozen 36 month(s)

Paraffin embedded tissue: Room temperature 12 month(s)

Tissue (Fresh): Refrigerated 3 day(s)

Tissue scrolls (FFPE): Room temperature 12 month(s)

Bone marrow: Room temperature 3 day(s)
Bone marrow: Refrigerated 7 day(s)

Neoplastic whole blood: Room temperature 3 day(s)
Neoplastic whole blood: Refrigerated 7 day(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children's Epic system, submission of a completed Oncology Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children's Epic system, no requisition form is required; please place the lab order electronically in Epic. Please send all samples via overnight delivery. Saturday deliveries are accepted; please check Saturday Delivery on shipment label.

If submitting tissue scroll specimen, please use this Tissue Scroll Calculator tool to determine the thickness and number of tissue scrolls to send to the laboratory.

For hematologic malignancies, submission of a sample containing at least 20% blasts is required. For solid tumor malignancies, submission of a sample containing at least 40% tumor is required. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Oncology chromosomal microarray analysis is performed on the Affymetrix OncoScan(TM) CNV platform to detect clinically significant chromosomal aberrations and loss of heterozygosity (LOH) in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

2 weeks

Lab Area

Institute for Genomic Medicine

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Methodology

Chromosomal microarray analysis, DNA extraction

CPT Codes

81277

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af
Inpatient Requirements

Special Collection

Bone marrow and neoplastic blood samples must contain a minimum of 20% blasts.
Solid tumor samples must contain a minimum of 40% tumor.
This test is not intended for residual disease detection.
An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Collect


Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

Minimum Volume

Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

 

Inpatient Specimen Preparation

issue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

Unacceptable Conditions

Delayed or improper handling, Insufficient tumor content in tumor sample, Inadequate tissue, Tissue degradation, Wrong type of specimen, Insufficient blast percentage in bone marrow or neoplastic blood sample

Stability

Tissue (Snap-frozen): Frozen 36 month(s)

OCT-embedded tissue: Frozen 36 month(s)

Paraffin embedded tissue: Room temperature 12 month(s)

Tissue (Fresh): Refrigerated 3 day(s)

Tissue scrolls (FFPE): Room temperature 12 month(s)

Bone marrow: Room temperature 3 day(s)
Bone marrow: Refrigerated 7 day(s)

Neoplastic whole blood: Room temperature 3 day(s)
Neoplastic whole blood: Refrigerated 7 day(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children's Epic system, submission of a completed Oncology Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children's Epic system, no requisition form is required; please place the lab order electronically in Epic. Please send all samples via overnight delivery. Saturday deliveries are accepted; please check Saturday Delivery on shipment label.

If submitting tissue scroll specimen, please use this Tissue Scroll Calculator tool to determine the thickness and number of tissue scrolls to send to the laboratory.

For hematologic malignancies, submission of a sample containing at least 20% blasts is required. For solid tumor malignancies, submission of a sample containing at least 40% tumor is required. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Oncology chromosomal microarray analysis is performed on the Affymetrix OncoScan(TM) CNV platform to detect clinically significant chromosomal aberrations and loss of heterozygosity (LOH) in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

2 weeks

CPT Codes

81277

Lab Area

Institute for Genomic Medicine

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af

Estimated Patient Price

$1,000 - $2,500
Overview/Billing

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af

CPT Codes

81277
Interpretation

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Methodology

Chromosomal microarray analysis, DNA extraction
NCH Lab Only

Special Collection

Bone marrow and neoplastic blood samples must contain a minimum of 20% blasts.
Solid tumor samples must contain a minimum of 40% tumor.
This test is not intended for residual disease detection.
An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Outpatient Submit with Specimen

Collect


Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

Minimum Volume

Specimen TypeType of ContainerVolume of SpecimenStatus
Paraffin embedded tissueParaffin block1 blockPreferred for Solid Tumor samples
Tissue scrolls (FFPE)Sterile container10-15 scrollsAlternate
Tissue (Snap-frozen)Tissue cassette50 mgAlternate
Tissue (Snap-frozen)Cryogenic tube50 mgAlternate
OCT-embedded tissueTissue cassette50 mgAlternate
OCT-embedded tissueCryogenic tube50 mgAlternate
Tissue (Fresh)Sterile container with saline50 mgAlternate
Bone marrow4 mL Purple tube (EDTA) 4 mLPreferred for Hematologic samples
Neoplastic blood4 mL Purple tube (EDTA)4 mLAlternate

 

Inpatient Specimen Preparation

issue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

Outpatient Specimen Preparation

Tissue (Snap-frozen): Freeze immediately after collection.
                                    Keep frozen
                                    Protect from heat
                                    Transport to laboratory as soon as possible

OCT-embedded tissue: Freeze immediately after collection.
                                      Keep frozen
                                      Protect from heat
                                      Transport to laboratory as soon as possible

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat

Tissue (Fresh): Transport to laboratory as soon as possible
                         Keep at room temperature or refrigerate
                         Do not add fixative
                         Do not formalin fix the sample

Tissue scrolls (FFPE): Must accompany H&E slide from the same tissue block used to make FFPE scrolls
                                     Protect from heat
                                     Keep at room temperature

Bone marrow: Do not freeze
                        Do not centrifuge
                       Transport to laboratory as soon as possible

Neoplastic blood: If delay in transport is greater than 24 hours, refrigerate
                           Transport to laboratory as soon as possible

InLab Processing

Send to Institute for Genomic Medicine (IGM) Lab with all submitted paperwork. For Non-EPIC lab orders, lab staff to order GENSP in Sunquest.

Stability

Tissue (Snap-frozen): Frozen 36 month(s)

OCT-embedded tissue: Frozen 36 month(s)

Paraffin embedded tissue: Room temperature 12 month(s)

Tissue (Fresh): Refrigerated 3 day(s)

Tissue scrolls (FFPE): Room temperature 12 month(s)

Bone marrow: Room temperature 3 day(s)
Bone marrow: Refrigerated 7 day(s)

Neoplastic whole blood: Room temperature 3 day(s)
Neoplastic whole blood: Refrigerated 7 day(s)

Unacceptable Conditions

Delayed or improper handling, Insufficient tumor content in tumor sample, Inadequate tissue, Tissue degradation, Wrong type of specimen, Insufficient blast percentage in bone marrow or neoplastic blood sample

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

2 weeks

Remarks

If you are an external healthcare provider with no access to Nationwide Children's Epic system, submission of a completed Oncology Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children's Epic system, no requisition form is required; please place the lab order electronically in Epic. Please send all samples via overnight delivery. Saturday deliveries are accepted; please check Saturday Delivery on shipment label.

If submitting tissue scroll specimen, please use this Tissue Scroll Calculator tool to determine the thickness and number of tissue scrolls to send to the laboratory.

For hematologic malignancies, submission of a sample containing at least 20% blasts is required. For solid tumor malignancies, submission of a sample containing at least 40% tumor is required. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 

Oncology chromosomal microarray analysis is performed on the Affymetrix OncoScan(TM) CNV platform to detect clinically significant chromosomal aberrations and loss of heterozygosity (LOH) in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Clinical Information

This test detects clinically significant chromosomal aberrations in the tumor and bone marrow/neoplastic blood specimens to aid in prognosis, diagnosis and/or treatment assessment. 

Examples of specific tumor assessments:

Neuroblastoma:

This test evaluates the following clinically significant aberrations within the cancer genome for Neuroblastoma as determined by the International Society of Paediatric Oncology Europe Neuroblastoma Group (SIOPEN):

  • Copy number loss of 1p, 3p, 4p and 11q
  • Copy number gain of 1q, 2p and 17q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 3p, 4p and 11q
  • MYCN and ALK gene amplification or copy gain
  • Whole chromosome gains 

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

Wilms Tumor:

This test evaluates for the following clinically significant aberrations within the cancer genome for Wilms Tumor:

  • Copy number loss of 1p, 11p13, 11p15, 16q, and 17p
  • Copy number gain of 1q
  • Copy-Neutral Loss of Heterozygosity (CN-LOH) involving 1p, 11p13, 11p15, 16q, and 17p

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

B-Acute Lymphoblastic Leukemia (B-ALL):

This test evaluates genome-wide clinically significant copy number aberrations and loss of heterozygosity including the following:

  •           Intrachromosomal amplification of 21 (iAMP21)
  •           Hyperdiploidy
  •           Doubled hypodiploidy and haploidy
  •           Deletions of clinically significant genes (e.g. IKZF1, ERG etc.)

Although this is primarily a targeted assay for aberrations of established clinical significance, other genomic copy number aberrations and LOH with emerging significance may be reported.

PLEASE NOTE:

  1. For solid tumor malignancies, at least 40% tumor must be present in the submitted tumor sample. For hematologic malignancies, at least 20% blasts must be present in the submitted bone marrow or neoplastic blood sample. An internal pathology review will be performed on submitted samples to verify tumor/blast content. 
  2. Pre-treatment samples are preferred over post-treatment samples. If submitting a sample collected during or after treatment (e.g. post-chemotherapy), please indicate post-treatment status of the sample on the requisition form.
  3. An FFPE tissue block is preferred over FFPE tissue scrolls. If submitting FFPE tissue scrolls, an H&E slide from a consecutive cut is also required Please contact the laboratory at (614) 722-5321 to request the scroll calculator application to be emailed to you to determine the number of scrolls required. Tissue blocks can be returned to the treating institution upon request.

Battery Members

Genome-wide chromosomal microarray analysis for solid tumor and hematologic malignancies with copy number and LOH reported for chromosomal aberrations.

Synonyms

  • B-ALL, BALL, Oncology microarray, Acute Lymphoblastic Leukemia, Wilms tumor microarray, Neuroblastoma microarray, segmental aneuploidy, segmental loss of heterozygosity, Neuroblastoma loss of heterozygosity 1p and 11q, Wilms Tumor loss of heterozygosity 1p and 16q, loss of heterozygosity, LOH, Copy number abnormality, NBL, segmental aberrations, array, Tumor, Cancer, microarray, SNP microarray, chromosomal microarray, genome microarray, Oncology, Neoplastic, copy number aberrations, IGM Test, Af

Methodology

Chromosomal microarray analysis, DNA extraction

CPT Codes

81277

Estimated Patient Price

$1,000 - $2,500

DC Code

5321

Downtime Availability

4-Not available

Lab Area

Lab Area
Institute for Genomic Medicine