Special Collection

At least 10% tumor must be present in the submitted sample (based on internal pathology review). FFPE unstained charged slides are preferred; please submit 6 slides (3 micron thick) AND consecutively cut H&E slide

Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Unstained tissue slide Charged Slides   Preferred
       
OCT-embedded tissue Tissue cassette   Preferred
OCT-embedded tissue Cryogenic tube   Alternate
       
Paraffin embedded tissue Paraffin block   Preferred
       
Tissue (Fresh) Sterile container with saline   Preferred
       
Tissue (Snap-frozen) Cryogenic tube   Preferred
Tissue (Snap-frozen) Tissue cassette   Alternate

Outpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor

 

Unacceptable Conditions

Decalcified tissue, Inadequate tissue, Delayed or improper handling, Tissue degradation, Wrong type of specimen

Stability

OCT-embedded tissue: Frozen 6 month(s)

Paraffin embedded tissue: Room temperature 6 month(s)

Tissue (Fresh): Room temperature 24 hour(s)
Tissue (Fresh): Refrigerated 72 hour(s)

Tissue (Snap-frozen): Frozen 6 month(s)

Unstained tissue slide: Room temperature 6 month(s)

Remarks

If you are an external healthcare provider and do not have access to Nationwide Children’s Epic system, submission of a completed Oncology Genetic Requisition Form is required. If you are an internal healthcare provider with access to Nationwide Children’s Epic system, no requisition form is required; Instead, please place the lab order electronically in Epic.

Acceptable specimen types for this test include fresh tissue, snap-frozen tissue, OCT-embedded tissue, formalin-fixed paraffin-embedded (FFPE) tissue, and unstained slides (6 consecutive, unstained, 3 micron-thick sections placed on positively charged slides must accompany a hematoxylin and eosin (H&E) stained slide from the adjacent section); decalcified sections will not be accepted. All specimens must be labeled with a patient name and at least one additional identifier (DOB, MRN, Specimen ID#, etc.). Sample submission prior to receiving therapy is strongly preferred. Please note, tissue blocks will be returned after testing is complete if there is remaining sample. If completing a test requisition, include return shipping information in the space provided.

All submitted specimens must be accompanied by a pathology report; samples must contain a minimum of ≥10% tumor. A pathology quality control assessment will be carried out by a Nationwide Children's Laboratory Services pathologist for all tumor submitted samples to verify the presence of adequate tumor in the submitted tissue.

Please send all samples via overnight courier service. Snap-frozen or OCT-embedded tissue should be sent covered in dry ice. Fresh tissue, FFPE tissue block (s), or FFPE slides may be sent at room temperature. Saturday deliveries are accepted; (please check "Saturday Delivery" on shipment label for Saturday delivery). Please call (614) 722-5321 for any questions regarding this test.

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Days Performed

Monday through Friday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

1 week

Lab Area

Institute for Genomic Medicine

Methodology

Fluorescence in situ hybridization (FISH)

CPT Codes

88271, 88275

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish

Special Collection

At least 10% tumor must be present in the submitted sample (based on internal pathology review). FFPE unstained charged slides are preferred; please submit 6 slides (3 micron thick) AND consecutively cut H&E slide

Collect

Specimen Type Type of Container Volume of Specimen Status
Unstained tissue slide Charged Slides   Preferred
       
OCT-embedded tissue Tissue cassette   Preferred
OCT-embedded tissue Cryogenic tube   Alternate
       
Paraffin embedded tissue Paraffin block   Preferred
       
Tissue (Fresh) Sterile container with saline   Preferred
       
Tissue (Snap-frozen) Cryogenic tube   Preferred
Tissue (Snap-frozen) Tissue cassette   Alternate

Inpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor
 

Unacceptable Conditions

Decalcified tissue, Inadequate tissue, Delayed or improper handling, Tissue degradation, Wrong type of specimen

Stability

OCT-embedded tissue: Frozen 6 month(s)

Paraffin embedded tissue: Room temperature 6 month(s)

Tissue (Fresh): Room temperature 24 hour(s)
Tissue (Fresh): Refrigerated 72 hour(s)

Tissue (Snap-frozen): Frozen 6 month(s)

Unstained tissue slide: Room temperature 6 month(s)

Remarks

If you are an external healthcare provider and do not have access to Nationwide Children’s Epic system, submission of a completed Oncology Genetic Requisition Form is required. If you are an internal healthcare provider with access to Nationwide Children’s Epic system, no requisition form is required; Instead, please place the lab order electronically in Epic.

Acceptable specimen types for this test include fresh tissue, snap-frozen tissue, OCT-embedded tissue, formalin-fixed paraffin-embedded (FFPE) tissue, and unstained slides (6 consecutive, unstained, 3 micron-thick sections placed on positively charged slides must accompany a hematoxylin and eosin (H&E) stained slide from the adjacent section); decalcified sections will not be accepted. All specimens must be labeled with a patient name and at least one additional identifier (DOB, MRN, Specimen ID#, etc.). Sample submission prior to receiving therapy is strongly preferred. Please note, tissue blocks will be returned after testing is complete if there is remaining sample. If completing a test requisition, include return shipping information in the space provided.

All submitted specimens must be accompanied by a pathology report; samples must contain a minimum of ≥10% tumor. A pathology quality control assessment will be carried out by a Nationwide Children's Laboratory Services pathologist for all tumor submitted samples to verify the presence of adequate tumor in the submitted tissue.

Please send all samples via overnight courier service. Snap-frozen or OCT-embedded tissue should be sent covered in dry ice. Fresh tissue, FFPE tissue block (s), or FFPE slides may be sent at room temperature. Saturday deliveries are accepted; (please check "Saturday Delivery" on shipment label for Saturday delivery). Please call (614) 722-5321 for any questions regarding this test.

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Days Performed

Monday through Friday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

1 week

CPT Codes

88271, 88275

Lab Area

Institute for Genomic Medicine

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish

Estimated Patient Price

$1,000 - $2,500

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish

CPT Codes

88271, 88275

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Methodology

Fluorescence in situ hybridization (FISH)

Special Collection

At least 10% tumor must be present in the submitted sample (based on internal pathology review). FFPE unstained charged slides are preferred; please submit 6 slides (3 micron thick) AND consecutively cut H&E slide

Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Unstained tissue slide Charged Slides   Preferred
       
OCT-embedded tissue Tissue cassette   Preferred
OCT-embedded tissue Cryogenic tube   Alternate
       
Paraffin embedded tissue Paraffin block   Preferred
       
Tissue (Fresh) Sterile container with saline   Preferred
       
Tissue (Snap-frozen) Cryogenic tube   Preferred
Tissue (Snap-frozen) Tissue cassette   Alternate

Inpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor
 

Outpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor

 

InLab Processing

Send to Cytogenetics Lab with all submitted paperwork. For Non-EPIC lab orders, lab staff to order SGENSP in Sunquest.

Stability

OCT-embedded tissue: Frozen 6 month(s)

Paraffin embedded tissue: Room temperature 6 month(s)

Tissue (Fresh): Room temperature 24 hour(s)
Tissue (Fresh): Refrigerated 72 hour(s)

Tissue (Snap-frozen): Frozen 6 month(s)

Unstained tissue slide: Room temperature 6 month(s)

Unacceptable Conditions

Decalcified tissue, Inadequate tissue, Delayed or improper handling, Tissue degradation, Wrong type of specimen

Days Performed

Monday through Friday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

1 week

Remarks

If you are an external healthcare provider and do not have access to Nationwide Children’s Epic system, submission of a completed Oncology Genetic Requisition Form is required. If you are an internal healthcare provider with access to Nationwide Children’s Epic system, no requisition form is required; Instead, please place the lab order electronically in Epic.

Acceptable specimen types for this test include fresh tissue, snap-frozen tissue, OCT-embedded tissue, formalin-fixed paraffin-embedded (FFPE) tissue, and unstained slides (6 consecutive, unstained, 3 micron-thick sections placed on positively charged slides must accompany a hematoxylin and eosin (H&E) stained slide from the adjacent section); decalcified sections will not be accepted. All specimens must be labeled with a patient name and at least one additional identifier (DOB, MRN, Specimen ID#, etc.). Sample submission prior to receiving therapy is strongly preferred. Please note, tissue blocks will be returned after testing is complete if there is remaining sample. If completing a test requisition, include return shipping information in the space provided.

All submitted specimens must be accompanied by a pathology report; samples must contain a minimum of ≥10% tumor. A pathology quality control assessment will be carried out by a Nationwide Children's Laboratory Services pathologist for all tumor submitted samples to verify the presence of adequate tumor in the submitted tissue.

Please send all samples via overnight courier service. Snap-frozen or OCT-embedded tissue should be sent covered in dry ice. Fresh tissue, FFPE tissue block (s), or FFPE slides may be sent at room temperature. Saturday deliveries are accepted; (please check "Saturday Delivery" on shipment label for Saturday delivery). Please call (614) 722-5321 for any questions regarding this test.

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish

Methodology

Fluorescence in situ hybridization (FISH)

CPT Codes

88271, 88275

Estimated Patient Price

$1,000 - $2,500

DC Code

5321

Downtime Availability

4-Not available
Outpatient Requirements

Special Collection

At least 10% tumor must be present in the submitted sample (based on internal pathology review). FFPE unstained charged slides are preferred; please submit 6 slides (3 micron thick) AND consecutively cut H&E slide

Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Unstained tissue slide Charged Slides   Preferred
       
OCT-embedded tissue Tissue cassette   Preferred
OCT-embedded tissue Cryogenic tube   Alternate
       
Paraffin embedded tissue Paraffin block   Preferred
       
Tissue (Fresh) Sterile container with saline   Preferred
       
Tissue (Snap-frozen) Cryogenic tube   Preferred
Tissue (Snap-frozen) Tissue cassette   Alternate

Outpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor

 

Unacceptable Conditions

Decalcified tissue, Inadequate tissue, Delayed or improper handling, Tissue degradation, Wrong type of specimen

Stability

OCT-embedded tissue: Frozen 6 month(s)

Paraffin embedded tissue: Room temperature 6 month(s)

Tissue (Fresh): Room temperature 24 hour(s)
Tissue (Fresh): Refrigerated 72 hour(s)

Tissue (Snap-frozen): Frozen 6 month(s)

Unstained tissue slide: Room temperature 6 month(s)

Remarks

If you are an external healthcare provider and do not have access to Nationwide Children’s Epic system, submission of a completed Oncology Genetic Requisition Form is required. If you are an internal healthcare provider with access to Nationwide Children’s Epic system, no requisition form is required; Instead, please place the lab order electronically in Epic.

Acceptable specimen types for this test include fresh tissue, snap-frozen tissue, OCT-embedded tissue, formalin-fixed paraffin-embedded (FFPE) tissue, and unstained slides (6 consecutive, unstained, 3 micron-thick sections placed on positively charged slides must accompany a hematoxylin and eosin (H&E) stained slide from the adjacent section); decalcified sections will not be accepted. All specimens must be labeled with a patient name and at least one additional identifier (DOB, MRN, Specimen ID#, etc.). Sample submission prior to receiving therapy is strongly preferred. Please note, tissue blocks will be returned after testing is complete if there is remaining sample. If completing a test requisition, include return shipping information in the space provided.

All submitted specimens must be accompanied by a pathology report; samples must contain a minimum of ≥10% tumor. A pathology quality control assessment will be carried out by a Nationwide Children's Laboratory Services pathologist for all tumor submitted samples to verify the presence of adequate tumor in the submitted tissue.

Please send all samples via overnight courier service. Snap-frozen or OCT-embedded tissue should be sent covered in dry ice. Fresh tissue, FFPE tissue block (s), or FFPE slides may be sent at room temperature. Saturday deliveries are accepted; (please check "Saturday Delivery" on shipment label for Saturday delivery). Please call (614) 722-5321 for any questions regarding this test.

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Days Performed

Monday through Friday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

1 week

Lab Area

Institute for Genomic Medicine

Methodology

Fluorescence in situ hybridization (FISH)

CPT Codes

88271, 88275

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish
Inpatient Requirements

Special Collection

At least 10% tumor must be present in the submitted sample (based on internal pathology review). FFPE unstained charged slides are preferred; please submit 6 slides (3 micron thick) AND consecutively cut H&E slide

Collect

Specimen Type Type of Container Volume of Specimen Status
Unstained tissue slide Charged Slides   Preferred
       
OCT-embedded tissue Tissue cassette   Preferred
OCT-embedded tissue Cryogenic tube   Alternate
       
Paraffin embedded tissue Paraffin block   Preferred
       
Tissue (Fresh) Sterile container with saline   Preferred
       
Tissue (Snap-frozen) Cryogenic tube   Preferred
Tissue (Snap-frozen) Tissue cassette   Alternate

Inpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor
 

Unacceptable Conditions

Decalcified tissue, Inadequate tissue, Delayed or improper handling, Tissue degradation, Wrong type of specimen

Stability

OCT-embedded tissue: Frozen 6 month(s)

Paraffin embedded tissue: Room temperature 6 month(s)

Tissue (Fresh): Room temperature 24 hour(s)
Tissue (Fresh): Refrigerated 72 hour(s)

Tissue (Snap-frozen): Frozen 6 month(s)

Unstained tissue slide: Room temperature 6 month(s)

Remarks

If you are an external healthcare provider and do not have access to Nationwide Children’s Epic system, submission of a completed Oncology Genetic Requisition Form is required. If you are an internal healthcare provider with access to Nationwide Children’s Epic system, no requisition form is required; Instead, please place the lab order electronically in Epic.

Acceptable specimen types for this test include fresh tissue, snap-frozen tissue, OCT-embedded tissue, formalin-fixed paraffin-embedded (FFPE) tissue, and unstained slides (6 consecutive, unstained, 3 micron-thick sections placed on positively charged slides must accompany a hematoxylin and eosin (H&E) stained slide from the adjacent section); decalcified sections will not be accepted. All specimens must be labeled with a patient name and at least one additional identifier (DOB, MRN, Specimen ID#, etc.). Sample submission prior to receiving therapy is strongly preferred. Please note, tissue blocks will be returned after testing is complete if there is remaining sample. If completing a test requisition, include return shipping information in the space provided.

All submitted specimens must be accompanied by a pathology report; samples must contain a minimum of ≥10% tumor. A pathology quality control assessment will be carried out by a Nationwide Children's Laboratory Services pathologist for all tumor submitted samples to verify the presence of adequate tumor in the submitted tissue.

Please send all samples via overnight courier service. Snap-frozen or OCT-embedded tissue should be sent covered in dry ice. Fresh tissue, FFPE tissue block (s), or FFPE slides may be sent at room temperature. Saturday deliveries are accepted; (please check "Saturday Delivery" on shipment label for Saturday delivery). Please call (614) 722-5321 for any questions regarding this test.

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Days Performed

Monday through Friday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

1 week

CPT Codes

88271, 88275

Lab Area

Institute for Genomic Medicine

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish

Estimated Patient Price

$1,000 - $2,500
Overview/Billing

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish

CPT Codes

88271, 88275
Interpretation

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Methodology

Fluorescence in situ hybridization (FISH)
NCH Lab Only

Special Collection

At least 10% tumor must be present in the submitted sample (based on internal pathology review). FFPE unstained charged slides are preferred; please submit 6 slides (3 micron thick) AND consecutively cut H&E slide

Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Unstained tissue slide Charged Slides   Preferred
       
OCT-embedded tissue Tissue cassette   Preferred
OCT-embedded tissue Cryogenic tube   Alternate
       
Paraffin embedded tissue Paraffin block   Preferred
       
Tissue (Fresh) Sterile container with saline   Preferred
       
Tissue (Snap-frozen) Cryogenic tube   Preferred
Tissue (Snap-frozen) Tissue cassette   Alternate

Inpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor
 

Outpatient Specimen Preparation

Unstained tissue slide: Keep at room temperature
                                     Protect from heat
                                     Must accompany H&E slide from adjacent section
                                     Do not decalcify
                                     Tumor sample must contain a minimum of 10% tumor

OCT-embedded tissue: Immediately place on dry ice and transport frozen
                                      Keep frozen
                                      Protect from heat
                                      Tumor sample must contain a minimum of 10% tumor

Paraffin embedded tissue: Keep at room temperature
                                           Protect from heat
                                           Do not decalcify
                                           Tumor sample must contain a minimum of 10% tumor

Tissue (Fresh): Transport to the lab immediately after collection
                         Keep at room temperature or refrigerate
                         Do not freeze
                         Tumor sample must contain a minimum of 10% tumor

Tissue (Snap-frozen): Freeze immediately after collection.
                                   Immediately place on dry ice and transport frozen
                                   Keep frozen
                                   Protect from heat
                                   Tumor sample must contain a minimum of 10% tumor

 

InLab Processing

Send to Cytogenetics Lab with all submitted paperwork. For Non-EPIC lab orders, lab staff to order SGENSP in Sunquest.

Stability

OCT-embedded tissue: Frozen 6 month(s)

Paraffin embedded tissue: Room temperature 6 month(s)

Tissue (Fresh): Room temperature 24 hour(s)
Tissue (Fresh): Refrigerated 72 hour(s)

Tissue (Snap-frozen): Frozen 6 month(s)

Unstained tissue slide: Room temperature 6 month(s)

Unacceptable Conditions

Decalcified tissue, Inadequate tissue, Delayed or improper handling, Tissue degradation, Wrong type of specimen

Days Performed

Monday through Friday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

1 week

Remarks

If you are an external healthcare provider and do not have access to Nationwide Children’s Epic system, submission of a completed Oncology Genetic Requisition Form is required. If you are an internal healthcare provider with access to Nationwide Children’s Epic system, no requisition form is required; Instead, please place the lab order electronically in Epic.

Acceptable specimen types for this test include fresh tissue, snap-frozen tissue, OCT-embedded tissue, formalin-fixed paraffin-embedded (FFPE) tissue, and unstained slides (6 consecutive, unstained, 3 micron-thick sections placed on positively charged slides must accompany a hematoxylin and eosin (H&E) stained slide from the adjacent section); decalcified sections will not be accepted. All specimens must be labeled with a patient name and at least one additional identifier (DOB, MRN, Specimen ID#, etc.). Sample submission prior to receiving therapy is strongly preferred. Please note, tissue blocks will be returned after testing is complete if there is remaining sample. If completing a test requisition, include return shipping information in the space provided.

All submitted specimens must be accompanied by a pathology report; samples must contain a minimum of ≥10% tumor. A pathology quality control assessment will be carried out by a Nationwide Children's Laboratory Services pathologist for all tumor submitted samples to verify the presence of adequate tumor in the submitted tissue.

Please send all samples via overnight courier service. Snap-frozen or OCT-embedded tissue should be sent covered in dry ice. Fresh tissue, FFPE tissue block (s), or FFPE slides may be sent at room temperature. Saturday deliveries are accepted; (please check "Saturday Delivery" on shipment label for Saturday delivery). Please call (614) 722-5321 for any questions regarding this test.

Clinical Information

Ewing sarcoma (ES) is an aggressive, malignant tumor that affects bone and soft tissue in children and young adults. ES is commonly caused by a chromosomal translocation resulting in an oncogenic gene fusion protein (PMID: 33497548). The presence or absence of a gene rearrangement involving EWSR1 can aid in differentiating sarcoma subtypes (e.g. rare soft tissue vs clear cell sarcoma). Two chromosomal translocations are observed in the majority of Ewing sarcomas: t(11;22)(q24;q12) resulting in EWSR1::FLI1 gene fusion, present in 85% of ES, and t(21;22)(q21;q12) resulting in EWSR1::ERG gene fusion, present in 10% of ES. This fluorescence in situ hybridization (FISH) analysis using the EWSR1 breakapart probe design will determine if the EWSR1 gene is rearranged but will not identify the EWSR1 gene fusion partner. Early detection of EWSR1 gene rearrangements is critical for diagnosis, targeted neoadjuvant therapy, and long-term survival (PMID: 33919988).         

Synonyms

  • Ewing, sarcoma, Ewing sarcoma, EWSR1, EWSR1 FISH, EWS, EWSR1 rearrangement, EWSR1 gene fusion, EWSR1 fusion, Ewing rearrangement, Ewing sarcoma rearrangement, Ewing sarcoma FISH, Ewing FISH, EWSR1 break-apart, EWSR1-FLI1, EWSR1-ERG, EWSR1-FUS, IGM test, FISH, Fish

Methodology

Fluorescence in situ hybridization (FISH)

CPT Codes

88271, 88275

Estimated Patient Price

$1,000 - $2,500

DC Code

5321

Downtime Availability

4-Not available

Lab Area

Lab Area
Institute for Genomic Medicine