Campylobacter, Salmonella, Vibrio, Yersinia enterocolitica, Shiga-Like Toxin-Producing E. coli (STEC), Shigella/Enteroinvasive E. coli (EIEC), Cryptosporidium, Cyclospora cayetanensis, Giardia lamblia, Norovirus
The FilmArray Gastrointestinal (GI) Panel Mid is a qualitative, multiplexed, nucleic acid-based in vitro diagnostic test capable of the simultaneous detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples in Cary-Blair transport media.
Feces: Collect in clean, dry bedpan or onto newspaper placed over toilet seat. Those portions of stool containing blood, pus or mucus are especially significant. Immediately place specimen in Cary Blair Transport Media (Para Pak C&S Orange); place at 2-8 C until transport to the lab. Sample must be placed in Cary-Blair within 2 hours of collection.
Patient Collection Instructions Handout
Sample must be placed in Cary Blair Transport Media (Para Pak C&S Orange) within 2 hours of collection. Preserved specimens must arrive in IDDL (performing laboratory) within 96 hours of collection. Store specimens at refrigerated temperature.
Ship specimens at refrigerated temperature. Must arrive within 96 hours.

Cary Blair Transport Media or C&S (fecal swab for low volume stools only)
Negative for all targets.
The presence of blood or mucus in the sample may interfere with testing.
Cary-Blair media used for dilution and processing of clinical stools, is screened by manufacturers for viable organisms but may not be specifically tested for microbial nucleic acids. The presence of nucleic acids at levels that can be detected by the FilmArray GI Panel Mid may lead to false positive test results.
Observed or Predicted Cross-Reactivity with Off-Panel Organisms
| BIOFIRE GI Panel Test Result | Cross-Reactive Organism(s) |
| Giardia lamblia | Bifidobacterium sppa Ruminococcus sppa |
| Norovirus GI/GII [NORO 1 assay] | Prevotella spp (sequences from unculturable/uncharacterized species)b Mediterraneibacter (Ruminococcus) gnavus Parabacteroides spp. Anaerostipes hadrus (select sequences) Enterobacter hormaechei (select sequences) |
| Salmonella | E. coli with variant type III secretion proteinc |
| Vibrio (V. parahaemolyticus/V. vulnificus/V. cholerae) | Vibrio alginolyticus Vibrio fluvialisd Vibrio mimucusd Grimontia (formerly Vibrio) hollisae |
| Yersinia enterocolitica | Yersinia frederikseniia, e Yersinia kristenseniie |
a Cross-reactivity was not observed when tested at high concentration (1.5x109 cells/mL). However, cross-reactivity was suspected or confirmed in clinical specimens and/or the potential for cross-reactivity is supported by in silico predictions.
b Identified by investigation of suspected non-specific Noro 1 assay reactivity in clinical specimens. Cross-reactive sequences are inconsistent with other Prevotella sequence data, suggesting the non-specific interaction is with atypical Prevotella species and/or sequences.
c Cross-reactivity resulting in false positive Salmonella results has not been observed in analytic or clinical testing. However, non-specific amplification products with Tm values close to the assay specific Tm range have been observed and the potential for false positive Salmonella test results exists.
d Detected at concentrations near the Vibrio assay LoD.
e Y. kristensenii and Y. fredericksenii are difficult to distinguish from Y. enterocolitica by standard laboratory methods.
| Requester | Contact Information |
| Patient and UMP/FV Care Team | Fairview Consumer Line at 612-672-1048 |
| MRL Outreach Client | dept-mrl-business-assessment@fairview.org |
| Research | research@fairview.org |
| CPT | Qty | HC Hospital | PR Clinic | Note |
| 87506 | 1 | 3008750601 | 8750601 | HC ENTERIC BACTERIA AND VIRUS BY NAT PANEL |
| Test Name | Component | Required | Description | Type | LOINC |
| LAB8444 | Focused Enteric Pathogen Panel by PCR | Orderable | |||
| SRC_STLM | Y | Specimen source: | Prompt | ||
| 1230005766 | Campylobacter species | Result | 49614-1 | ||
| 1230005769 | Salmonella species | Result | 79383-6 | ||
| 1230005770 | Vibrio species | Result | 49609-1 | ||
| 1230005772 | Yersinia enterocolitica | Result | 92723-6 | ||
| 1230005776 | Shiga-like-toxin-producing E. coli (STEC) | Result | 82203-1 | ||
| 1230005778 | Shigella/Enteroinvasive E. coli (EIEC) | Result | 80350-2 | ||
| 1230005779 | Cryptosporidium species | Result | 82205-6 | ||
| 1230005780 | Cyclospora cayetanensis | Result | 82206-4 | ||
| 1230005782 | Giardia lamblia | Result | 82208-0 | ||
| 1230005785 | Norovirus Gl/Gll | Result | 82211-4 |
| Ordering |
Campylobacter, Salmonella, Vibrio, Yersinia enterocolitica, Shiga-Like Toxin-Producing E. coli (STEC), Shigella/Enteroinvasive E. coli (EIEC), Cryptosporidium, Cyclospora cayetanensis, Giardia lamblia, Norovirus
The FilmArray Gastrointestinal (GI) Panel Mid is a qualitative, multiplexed, nucleic acid-based in vitro diagnostic test capable of the simultaneous detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples in Cary-Blair transport media.
| Collection & Processing |
Feces: Collect in clean, dry bedpan or onto newspaper placed over toilet seat. Those portions of stool containing blood, pus or mucus are especially significant. Immediately place specimen in Cary Blair Transport Media (Para Pak C&S Orange); place at 2-8 C until transport to the lab. Sample must be placed in Cary-Blair within 2 hours of collection.
Patient Collection Instructions Handout
Sample must be placed in Cary Blair Transport Media (Para Pak C&S Orange) within 2 hours of collection. Preserved specimens must arrive in IDDL (performing laboratory) within 96 hours of collection. Store specimens at refrigerated temperature.
Ship specimens at refrigerated temperature. Must arrive within 96 hours.
| Containers |

Cary Blair Transport Media or C&S (fecal swab for low volume stools only)
| Result Interpretation |
Negative for all targets.
The presence of blood or mucus in the sample may interfere with testing.
Cary-Blair media used for dilution and processing of clinical stools, is screened by manufacturers for viable organisms but may not be specifically tested for microbial nucleic acids. The presence of nucleic acids at levels that can be detected by the FilmArray GI Panel Mid may lead to false positive test results.
Observed or Predicted Cross-Reactivity with Off-Panel Organisms
| BIOFIRE GI Panel Test Result | Cross-Reactive Organism(s) |
| Giardia lamblia | Bifidobacterium sppa Ruminococcus sppa |
| Norovirus GI/GII [NORO 1 assay] | Prevotella spp (sequences from unculturable/uncharacterized species)b Mediterraneibacter (Ruminococcus) gnavus Parabacteroides spp. Anaerostipes hadrus (select sequences) Enterobacter hormaechei (select sequences) |
| Salmonella | E. coli with variant type III secretion proteinc |
| Vibrio (V. parahaemolyticus/V. vulnificus/V. cholerae) | Vibrio alginolyticus Vibrio fluvialisd Vibrio mimucusd Grimontia (formerly Vibrio) hollisae |
| Yersinia enterocolitica | Yersinia frederikseniia, e Yersinia kristenseniie |
a Cross-reactivity was not observed when tested at high concentration (1.5x109 cells/mL). However, cross-reactivity was suspected or confirmed in clinical specimens and/or the potential for cross-reactivity is supported by in silico predictions.
b Identified by investigation of suspected non-specific Noro 1 assay reactivity in clinical specimens. Cross-reactive sequences are inconsistent with other Prevotella sequence data, suggesting the non-specific interaction is with atypical Prevotella species and/or sequences.
c Cross-reactivity resulting in false positive Salmonella results has not been observed in analytic or clinical testing. However, non-specific amplification products with Tm values close to the assay specific Tm range have been observed and the potential for false positive Salmonella test results exists.
d Detected at concentrations near the Vibrio assay LoD.
e Y. kristensenii and Y. fredericksenii are difficult to distinguish from Y. enterocolitica by standard laboratory methods.
| Administrative |
| Requester | Contact Information |
| Patient and UMP/FV Care Team | Fairview Consumer Line at 612-672-1048 |
| MRL Outreach Client | dept-mrl-business-assessment@fairview.org |
| Research | research@fairview.org |
| CPT | Qty | HC Hospital | PR Clinic | Note |
| 87506 | 1 | 3008750601 | 8750601 | HC ENTERIC BACTERIA AND VIRUS BY NAT PANEL |
| Interface Mapping |
| Test Name | Component | Required | Description | Type | LOINC |
| LAB8444 | Focused Enteric Pathogen Panel by PCR | Orderable | |||
| SRC_STLM | Y | Specimen source: | Prompt | ||
| 1230005766 | Campylobacter species | Result | 49614-1 | ||
| 1230005769 | Salmonella species | Result | 79383-6 | ||
| 1230005770 | Vibrio species | Result | 49609-1 | ||
| 1230005772 | Yersinia enterocolitica | Result | 92723-6 | ||
| 1230005776 | Shiga-like-toxin-producing E. coli (STEC) | Result | 82203-1 | ||
| 1230005778 | Shigella/Enteroinvasive E. coli (EIEC) | Result | 80350-2 | ||
| 1230005779 | Cryptosporidium species | Result | 82205-6 | ||
| 1230005780 | Cyclospora cayetanensis | Result | 82206-4 | ||
| 1230005782 | Giardia lamblia | Result | 82208-0 | ||
| 1230005785 | Norovirus Gl/Gll | Result | 82211-4 |
| Private Details |

